chain.hpp File Reference

Implements the concept of a state (in a finite-state diagram) and markov chains. More...

#include <map>
#include "viennashe/models/markovchain/reaction_rates.hpp"
#include "viennashe/exception.hpp"
#include "viennashe/models/markovchain/exception.hpp"
#include "viennashe/log/log.hpp"
#include "viennashe/math/linalg_util.hpp"
#include "viennashe/solvers/forwards.h"

Go to the source code of this file.

Classes
class	viennashe::models::state_base
	The basic concept of a state in Markov-Chains. More...
class	viennashe::models::chain
	Implementation of Markov-Chains. More...

Namespaces
namespace	viennashe
	The main ViennaSHE namespace. All functionality resides inside this namespace.
namespace	viennashe::models
	Namespace containing everything models related.

Functions
void	viennashe::models::set_chain_to_equilibrium_expectation (chain &c)
	Solves the time averaged set of equilibrium (dt->infty) equations for the given Markov-Chain and sets the respective occupancies The occupancies f_i will be values between zero and one, where sum_i f_i = 1. More...
void	viennashe::models::solve_for_expectation_occupancies (chain &c, double dt)
	Solves the time averaged set of equations (including time derivatives) for the occupancies f_i in a given Markov-Chain and sets the resp. occupancies. The occupancies f_i will be values between zero and one, where sum_i f_i = 1. In order to solve the time dependent equations the backward-euler method is used. More...

Detailed Description

Implements the concept of a state (in a finite-state diagram) and markov chains.

Definition in file chain.hpp.